We analyze large-scale biological data
Bioinformatics solutions

Services

We develop tools, algorithms and databases for the analysis of biological data.

Data analysis

Our bioinformatics experts can analyze your gene and protein expression data in single-cell, spatial and bulk RNA-seq, along with ATAC-seq, molecular interaction networks, protein sequence and structure data.

Data curation

Our data curation experts can find, curate, annotate and integrate meaningful biological data and information from publications and databases to help you create custom datasets for your research needs.

Product development

Our software engineering experts can design and develop a scalable and cost-effective client-server application with a database and user-interface customized for your data and research.

Solutions

Take a look at some of our products and projects.

CellKb
CellKb
Cell type reference database and annotation service
HitPredict
HitPredict
Database of protein-protein interactions with reliability scores
...
AI-ready single-cell data
High-quality, deeply annotated, labeled custom single-cell atlases
RNA-seq
Bioinformatics consulting services
Analysis and annotation of single-cell, spatial, bulk RNA-seq/ATAC-seq data
...
Web application development
Scalable, secure and reliable cloud-native custom databases/applications
...
Marathon management system
Cloud-based system for capture and storage of real-time marathon data

Testimonials

See what our users have to say.

CellKb has been transformative for our work in so many unexpected ways beyond its powerful single-cell RNA-seq interface and tools. From predicting cell types from bulk transcriptomics measurement to annotating hundreds of thousands of spots from spatial transcriptomics and more, its high accuracy, high quality database has become a central piece of our bioinformatics infrastructure.

Associate Professor, The University of Chicago

I routinely use CellKb for annotating my single-cell RNA-seq datasets, and I must say, it exceeds my expectations in every way. CellKb streamlined the entire process with its comprehensive, literature-backed, reference database, and intuitive interface. As a Core lab working across many biological systems, CellKb’s powerful annotation capabilities allow us to confidently annotate single cell data sets without having to become experts in the biology of the organism or tissue.

Director, Bioinformatics Core, Salk Institute

Our lab has been using CellKb since 2020 for annotating cell types in single-cell and spatial transcriptomics data. CellKb is powered by a highly curated database derived from a large number of studies leading to significantly low batch-to-batch variability, which we struggled with in the past when using small data sets as reference. CellKb is supported by an expert team of bioinformaticians at Combinatics who are always willing to help and clarify doubts within 24 hours.

Associate Professor, University of South Australia

Awards

We won the 2024 Best of Show Award for CellKb at Bio-IT World Expo in Boston.

CellKb

Trusted by

We work with companies and academic institutions around the world.

Alnylam
Merck Group
Johnson & Johnson
Molecular Health
University of Chicago
University of Tokyo
University of South Australia
Salk Institute

Get in touch

Combinatics K. K.
2-2-6 Sugano
Ichikawa-shi, Chiba
Japan 272-0824.

 +81-4-7713-3907

 support_at_combinatics.com