Cell Type Reference Database
version 2.1 21 February 2021
A knowledgebase of manually collected, curated and annotated cell types in multiple species with associated protein-protein interaction networks. CellKb allows users to search through published cell type signatures from selected single-cell and bulk RNA-seq experiments.
CellKb v3.0 contains 24,132 signatures of 1,977 cell types from 9 species extracted from 475 publications with 610,407 associated protein-protein interactions.
Cell Type Reference Database of mammalian hematopoietic cell types
version 1.0.1 21 February 2020
A knowledgebase of manually collected, curated and annotated cell types related to the immune system in mouse with associated protein-protein interaction networks. CellKb Immune is a subset of CellKb having the same functionality.
CellKb Immune v1.0.1 contains 1,833 signatures of 203 hematopoietic cell types from mouse extracted from 156 publications with 34,154 associated protein-protein interactions. See Preprint
Protein-protein interactions with reliability scores
version 10.0 3 August 2020
An open-source database of experimentally identified protein-protein interactions collected from literature with reliability scores assigned based on the annotations of the interacting proteins. The first version of HitPredict was released in 2005. The HitPredict service and updates are currently provided through Combinatics.
HitPredict v10.0 contains 815,892 protein-protein interactions between 89,685 proteins from 128 species.